Detailed information of SNP:
|
SNP ID:
sf1218915655(Gbrowse)
Chromosome: chr12 Position: 18915655 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 61.30% | 38.70% |
| All Indica | 796 | 94.47% | 5.53% |
| All Japonica | 497 | 6.24% | 93.76% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 373 | 96.78% | 3.22% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 210 | 87.14% | 12.86% |
| Temperate Japonica | 335 | 3.58% | 96.42% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 19.12% | 80.88% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218915655 | A->C | INTERGENIC | None |