Detailed information of SNP:
|
SNP ID:
sf1218929145(Gbrowse)
Chromosome: chr12 Position: 18929145 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 54.90% | 45.10% |
| All Indica | 799 | 84.73% | 15.27% |
| All Japonica | 497 | 4.02% | 95.98% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 94.13% | 5.87% |
| Indica II | 213 | 76.53% | 23.47% |
| Indica Intermediate | 211 | 76.30% | 23.70% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218929145 | G->C | INTERGENIC | None |