Detailed information of SNP:
|
SNP ID:
sf1218929206(Gbrowse)
Chromosome: chr12 Position: 18929206 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1324 | 57.85% | 42.15% |
| All Indica | 731 | 27.91% | 72.09% |
| All Japonica | 486 | 99.18% | 0.82% |
| Aus | 51 | 84.31% | 15.69% |
| Indica I | 342 | 15.20% | 84.80% |
| Indica II | 194 | 31.96% | 68.04% |
| Indica Intermediate | 195 | 46.15% | 53.85% |
| Temperate Japonica | 333 | 99.70% | 0.30% |
| Tropical Japonica | 92 | 98.91% | 1.09% |
| Japonica Intermediate | 61 | 96.72% | 3.28% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218929206 | C->A | INTERGENIC | None |