Detailed information of SNP:
|
SNP ID:
sf1218945503(Gbrowse)
Chromosome: chr12 Position: 18945503 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1399 | 97.14% | 2.86% |
| All Indica | 781 | 95.65% | 4.35% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 368 | 95.11% | 4.89% |
| Indica II | 209 | 96.65% | 3.35% |
| Indica Intermediate | 204 | 95.59% | 4.41% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218945503 | C->T | LOC_Os12g31550(LOC_Os12g31550.1) | INTRON |