Detailed information of SNP:
|
SNP ID:
sf1219033537(Gbrowse)
Chromosome: chr12 Position: 19033537 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 95.25% | 4.75% |
| All Indica | 791 | 91.78% | 8.22% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 93.28% | 6.72% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 206 | 81.07% | 18.93% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219033537 | C->T | INTERGENIC | None |