Detailed information of SNP:
|
SNP ID:
sf1219033910(Gbrowse)
Chromosome: chr12 Position: 19033910 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 79.10% | 20.90% |
| All Indica | 796 | 90.08% | 9.92% |
| All Japonica | 497 | 57.14% | 42.86% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 91.42% | 8.58% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 78.10% | 21.90% |
| Temperate Japonica | 335 | 42.09% | 57.91% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219033910 | A->G | INTERGENIC | None |