Detailed information of SNP:
|
SNP ID:
sf1219037475(Gbrowse)
Chromosome: chr12 Position: 19037475 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1401 | 93.50% | 6.50% |
| All Indica | 781 | 88.60% | 11.40% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 367 | 89.37% | 10.63% |
| Indica II | 208 | 85.58% | 14.42% |
| Indica Intermediate | 206 | 90.29% | 9.71% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219037475 | C->T | LOC_Os12g31650(LOC_Os12g31650.1) | INTRON |