Detailed information of SNP:
|
SNP ID:
sf1219048869(Gbrowse)
Chromosome: chr12 Position: 19048869 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1343 | 97.02% | 2.98% |
| All Indica | 761 | 97.63% | 2.37% |
| All Japonica | 463 | 95.25% | 4.75% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 361 | 99.45% | 0.55% |
| Indica II | 211 | 100.00% | 0.00% |
| Indica Intermediate | 189 | 91.53% | 8.47% |
| Temperate Japonica | 324 | 97.84% | 2.16% |
| Tropical Japonica | 76 | 82.89% | 17.11% |
| Japonica Intermediate | 63 | 96.83% | 3.17% |
| Group VI/Aromatic | 12 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219048869 | G->A | INTERGENIC | None |