Detailed information of SNP:
|
SNP ID:
sf1219077696(Gbrowse)
Chromosome: chr12 Position: 19077696 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1375 | 52.44% | 47.56% |
| All Indica | 771 | 60.57% | 39.43% |
| All Japonica | 490 | 44.08% | 55.92% |
| Aus | 62 | 29.03% | 70.97% |
| Indica I | 363 | 60.06% | 39.94% |
| Indica II | 206 | 77.18% | 22.82% |
| Indica Intermediate | 202 | 44.55% | 55.45% |
| Temperate Japonica | 334 | 58.38% | 41.62% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 62 | 30.65% | 69.35% |
| Group VI/Aromatic | 12 | 8.33% | 91.67% |
| Intermediate | 40 | 47.50% | 52.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219077696 | C->T | LOC_Os12g31748(LOC_Os12g31748.1) | UTR_3_PRIME |
| sf1219077696 | C->T | LOC_Os12g31748(LOC_Os12g31748.2) | UTR_3_PRIME |