Detailed information of SNP:
|
SNP ID:
sf1219083316(Gbrowse)
Chromosome: chr12 Position: 19083316 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 91.57% | 8.43% |
| All Indica | 795 | 86.29% | 13.71% |
| All Japonica | 493 | 98.78% | 1.22% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 88.74% | 11.26% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 209 | 77.51% | 22.49% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 66 | 96.97% | 3.03% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219083316 | A->C | LOC_Os12g31748(LOC_Os12g31748.1) | INTRON |
| sf1219083316 | A->C | LOC_Os12g31748(LOC_Os12g31748.2) | INTRON |