Detailed information of SNP:
|
SNP ID:
sf1219085262(Gbrowse)
Chromosome: chr12 Position: 19085262 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1390 | 56.76% | 43.24% |
| All Indica | 795 | 88.68% | 11.32% |
| All Japonica | 497 | 5.43% | 94.57% |
| Aus | 42 | 88.10% | 11.90% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 210 | 75.71% | 24.29% |
| Indica Intermediate | 210 | 84.29% | 15.71% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 20.59% | 79.41% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219085262 | A->G | LOC_Os12g31748(LOC_Os12g31748.1) | INTRON |
| sf1219085262 | A->G | LOC_Os12g31748(LOC_Os12g31748.2) | INTRON |