Detailed information of SNP:
|
SNP ID:
sf1219086560(Gbrowse)
Chromosome: chr12 Position: 19086560 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 57.83% | 42.17% |
| All Indica | 798 | 27.94% | 72.06% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 15.47% | 84.53% |
| Indica II | 213 | 35.21% | 64.79% |
| Indica Intermediate | 210 | 42.86% | 57.14% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219086560 | G->A | LOC_Os12g31748(LOC_Os12g31748.1) | Synonymous |
| sf1219086560 | G->A | LOC_Os12g31748(LOC_Os12g31748.2) | Synonymous |