Detailed information of SNP:
|
SNP ID:
sf1219092458(Gbrowse)
Chromosome: chr12 Position: 19092458 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 76.80% | 23.20% |
| All Indica | 799 | 97.37% | 2.63% |
| All Japonica | 496 | 43.55% | 56.45% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 334 | 53.89% | 46.11% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 41.18% | 58.82% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219092458 | C->T | LOC_Os12g31770(LOC_Os12g31770.1) | INTRON |