Detailed information of SNP:
|
SNP ID:
sf1219098366(Gbrowse)
Chromosome: chr12 Position: 19098366 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 87.83% | 12.17% |
| All Indica | 798 | 86.47% | 13.53% |
| All Japonica | 492 | 96.75% | 3.25% |
| Aus | 67 | 34.33% | 65.67% |
| Indica I | 375 | 82.67% | 17.33% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 210 | 87.14% | 12.86% |
| Temperate Japonica | 334 | 98.80% | 1.20% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 65 | 86.15% | 13.85% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219098366 | A->C | LOC_Os12g31790(LOC_Os12g31790.1) | INTRON |