Detailed information of SNP:
|
SNP ID:
sf1219101557(Gbrowse)
Chromosome: chr12 Position: 19101557 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 87.32% | 12.68% |
| All Indica | 799 | 85.98% | 14.02% |
| All Japonica | 497 | 95.77% | 4.23% |
| Aus | 67 | 34.33% | 65.67% |
| Indica I | 375 | 82.67% | 17.33% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 211 | 86.26% | 13.74% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219101557 | T->C | LOC_Os12g31800(LOC_Os12g31800.1) | INTRON |