Detailed information of SNP:
|
SNP ID:
sf1219103107(Gbrowse)
Chromosome: chr12 Position: 19103107 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1356 | 97.49% | 2.51% |
| All Indica | 795 | 99.75% | 0.25% |
| All Japonica | 442 | 93.21% | 6.79% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 207 | 100.00% | 0.00% |
| Temperate Japonica | 301 | 91.03% | 8.97% |
| Tropical Japonica | 81 | 100.00% | 0.00% |
| Japonica Intermediate | 60 | 95.00% | 5.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219103107 | C->T | LOC_Os12g31800(LOC_Os12g31800.1) | INTRON |