Detailed information of SNP:
|
SNP ID:
sf1219104530(Gbrowse)
Chromosome: chr12 Position: 19104530 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1375 | 91.71% | 8.29% |
| All Indica | 795 | 99.62% | 0.38% |
| All Japonica | 460 | 78.70% | 21.30% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 207 | 100.00% | 0.00% |
| Temperate Japonica | 308 | 87.99% | 12.01% |
| Tropical Japonica | 88 | 42.05% | 57.95% |
| Japonica Intermediate | 64 | 84.38% | 15.62% |
| Group VI/Aromatic | 13 | 30.77% | 69.23% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219104530 | G->A | LOC_Os12g31800(LOC_Os12g31800.1) | Non-Synonymous SNP |