Detailed information of SNP:
|
SNP ID:
sf1219121263(Gbrowse)
Chromosome: chr12 Position: 19121263 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 71.79% | 28.21% |
| All Indica | 799 | 94.62% | 5.38% |
| All Japonica | 497 | 40.04% | 59.96% |
| Aus | 67 | 52.24% | 47.76% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 335 | 52.24% | 47.76% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 29.41% | 70.59% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219121263 | C->T | LOC_Os12g31820(LOC_Os12g31820.1) | Synonymous |