Detailed information of SNP:
|
SNP ID:
sf1219125992(Gbrowse)
Chromosome: chr12 Position: 19125992 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 77.77% | 22.23% |
| All Indica | 797 | 68.01% | 31.99% |
| All Japonica | 497 | 94.97% | 5.03% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 374 | 67.11% | 32.89% |
| Indica II | 213 | 82.16% | 17.84% |
| Indica Intermediate | 210 | 55.24% | 44.76% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219125992 | A->G | LOC_Os12g31830(LOC_Os12g31830.1) | Non-Synonymous SNP |