Detailed information of SNP:
|
SNP ID:
sf1219126765(Gbrowse)
Chromosome: chr12 Position: 19126765 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 77.91% | 22.09% |
| All Indica | 798 | 68.05% | 31.95% |
| All Japonica | 496 | 95.16% | 4.84% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 375 | 66.67% | 33.33% |
| Indica II | 212 | 83.02% | 16.98% |
| Indica Intermediate | 211 | 55.45% | 44.55% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 93 | 95.70% | 4.30% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219126765 | A->T | LOC_Os12g31830(LOC_Os12g31830.1) | INTRON |