Detailed information of SNP:
|
SNP ID:
sf1219129241(Gbrowse)
Chromosome: chr12 Position: 19129241 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 63.37% | 36.63% |
| All Indica | 796 | 37.31% | 62.69% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 374 | 35.56% | 64.44% |
| Indica II | 212 | 22.64% | 77.36% |
| Indica Intermediate | 210 | 55.24% | 44.76% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219129241 | G->A | INTERGENIC | None |