Detailed information of SNP:
|
SNP ID:
sf1219130523(Gbrowse)
Chromosome: chr12 Position: 19130523 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1159 | 66.52% | 33.48% |
| All Indica | 784 | 83.80% | 16.20% |
| All Japonica | 266 | 11.28% | 88.72% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 373 | 85.52% | 14.48% |
| Indica II | 211 | 93.36% | 6.64% |
| Indica Intermediate | 200 | 70.50% | 29.50% |
| Temperate Japonica | 206 | 3.40% | 96.60% |
| Tropical Japonica | 22 | 31.82% | 68.18% |
| Japonica Intermediate | 38 | 42.11% | 57.89% |
| Group VI/Aromatic | 7 | 14.29% | 85.71% |
| Intermediate | 35 | 68.57% | 31.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219130523 | C->G | LOC_Os12g31840(LOC_Os12g31840.1) | Non-Synonymous SNP |