Detailed information of SNP:
|
SNP ID:
sf1219136391(Gbrowse)
Chromosome: chr12 Position: 19136391 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 81.81% | 18.19% |
| All Indica | 798 | 74.94% | 25.06% |
| All Japonica | 497 | 95.17% | 4.83% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 375 | 70.40% | 29.60% |
| Indica II | 212 | 91.98% | 8.02% |
| Indica Intermediate | 211 | 65.88% | 34.12% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219136391 | G->A | LOC_Os12g31850(LOC_Os12g31850.3) | INTRON |
| sf1219136391 | G->A | LOC_Os12g31850(LOC_Os12g31850.1) | INTRON |
| sf1219136391 | G->A | LOC_Os12g31850(LOC_Os12g31850.4) | INTRON |
| sf1219136391 | G->A | LOC_Os12g31850(LOC_Os12g31850.2) | UTR_5_PRIME |