Detailed information of SNP:
|
SNP ID:
sf1219142017(Gbrowse)
Chromosome: chr12 Position: 19142017 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 58.49% | 41.51% |
| All Indica | 799 | 29.16% | 70.84% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 23.73% | 76.27% |
| Indica II | 213 | 37.56% | 62.44% |
| Indica Intermediate | 211 | 30.33% | 69.67% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219142017 | A->G | INTERGENIC | None |