Detailed information of SNP:
|
SNP ID:
sf1219143477(Gbrowse)
Chromosome: chr12 Position: 19143477 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1400 | 62.43% | 37.57% |
| All Indica | 783 | 36.53% | 63.47% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 81.82% | 18.18% |
| Indica I | 371 | 40.43% | 59.57% |
| Indica II | 209 | 17.22% | 82.78% |
| Indica Intermediate | 203 | 49.26% | 50.74% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219143477 | A->G | INTERGENIC | None |