Detailed information of SNP:
|
SNP ID:
sf1219144356(Gbrowse)
Chromosome: chr12 Position: 19144356 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 89.56% | 10.44% |
| All Indica | 798 | 84.09% | 15.91% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 80.53% | 19.47% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 210 | 78.10% | 21.90% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219144356 | C->T | INTERGENIC | None |