Detailed information of SNP:
|
SNP ID:
sf1219147928(Gbrowse)
Chromosome: chr12 Position: 19147928 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 89.15% | 10.85% |
| All Indica | 799 | 85.86% | 14.14% |
| All Japonica | 497 | 95.57% | 4.43% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 375 | 78.40% | 21.60% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219147928 | C->T | INTERGENIC | None |