Detailed information of SNP:
|
SNP ID:
sf1219147949(Gbrowse)
Chromosome: chr12 Position: 19147949 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 81.84% | 18.16% |
| All Indica | 798 | 77.32% | 22.68% |
| All Japonica | 497 | 95.77% | 4.23% |
| Aus | 64 | 25.00% | 75.00% |
| Indica I | 375 | 78.13% | 21.87% |
| Indica II | 212 | 74.06% | 25.94% |
| Indica Intermediate | 211 | 79.15% | 20.85% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219147949 | C->T | INTERGENIC | None |