Detailed information of SNP:
|
SNP ID:
sf1219161070(Gbrowse)
Chromosome: chr12 Position: 19161070 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1409 | 89.64% | 10.36% |
| All Indica | 789 | 83.65% | 16.35% |
| All Japonica | 497 | 96.98% | 3.02% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 367 | 80.38% | 19.62% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 209 | 77.51% | 22.49% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219161070 | T->C | INTERGENIC | None |