Detailed information of SNP:
|
SNP ID:
sf1219163322(Gbrowse)
Chromosome: chr12 Position: 19163322 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 54.58% | 45.42% |
| All Indica | 798 | 30.33% | 69.67% |
| All Japonica | 497 | 97.38% | 2.62% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 375 | 37.60% | 62.40% |
| Indica II | 212 | 10.38% | 89.62% |
| Indica Intermediate | 211 | 37.44% | 62.56% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219163322 | A->C | INTERGENIC | None |