Detailed information of SNP:
|
SNP ID:
sf1219168514(Gbrowse)
Chromosome: chr12 Position: 19168514 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1399 | 94.00% | 6.00% |
| All Indica | 782 | 89.51% | 10.49% |
| All Japonica | 495 | 99.80% | 0.20% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 362 | 87.57% | 12.43% |
| Indica II | 211 | 93.36% | 6.64% |
| Indica Intermediate | 209 | 89.00% | 11.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219168514 | A->T | INTERGENIC | None |