Detailed information of SNP:
|
SNP ID:
sf1219174059(Gbrowse)
Chromosome: chr12 Position: 19174059 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 52.72% | 47.28% |
| All Indica | 797 | 82.56% | 17.44% |
| All Japonica | 497 | 2.82% | 97.18% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 374 | 96.26% | 3.74% |
| Indica II | 213 | 64.32% | 35.68% |
| Indica Intermediate | 210 | 76.67% | 23.33% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219174059 | G->A | LOC_Os12g31880(LOC_Os12g31880.1) | Non-Synonymous SNP |