Detailed information of SNP:
|
SNP ID:
sf1219175158(Gbrowse)
Chromosome: chr12 Position: 19175158 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 60.51% | 39.49% |
| All Indica | 798 | 94.36% | 5.64% |
| All Japonica | 497 | 3.62% | 96.38% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 94.65% | 5.35% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219175158 | T->C | LOC_Os12g31880(LOC_Os12g31880.1) | Non-Synonymous SNP |