Detailed information of SNP:
|
SNP ID:
sf1219182134(Gbrowse)
Chromosome: chr12 Position: 19182134 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1374 | 92.65% | 7.35% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 456 | 80.26% | 19.74% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 325 | 91.08% | 8.92% |
| Tropical Japonica | 74 | 33.78% | 66.22% |
| Japonica Intermediate | 57 | 78.95% | 21.05% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 84.21% | 15.79% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219182134 | C->A | INTERGENIC | None |