Detailed information of SNP:
|
SNP ID:
sf1219184605(Gbrowse)
Chromosome: chr12 Position: 19184605 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 94.29% | 5.71% |
| All Indica | 799 | 91.36% | 8.64% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 87.88% | 12.12% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 77.00% | 23.00% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219184605 | C->T | LOC_Os12g31900(LOC_Os12g31900.1) | Non-Synonymous SNP |