Detailed information of SNP:
|
SNP ID:
sf1219186916(Gbrowse)
Chromosome: chr12 Position: 19186916 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1392 | 88.29% | 11.71% |
| All Indica | 772 | 82.77% | 17.23% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 359 | 83.57% | 16.43% |
| Indica II | 208 | 84.62% | 15.38% |
| Indica Intermediate | 205 | 79.51% | 20.49% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219186916 | A->C | INTERGENIC | None |