Detailed information of SNP:
|
SNP ID:
sf1219198494(Gbrowse)
Chromosome: chr12 Position: 19198494 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 68.13% | 31.87% |
| All Indica | 797 | 46.30% | 53.70% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 77.27% | 22.73% |
| Indica I | 374 | 56.15% | 43.85% |
| Indica II | 213 | 36.15% | 63.85% |
| Indica Intermediate | 210 | 39.05% | 60.95% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219198494 | G->T | INTERGENIC | None |