Detailed information of SNP:
|
SNP ID:
sf1219198921(Gbrowse)
Chromosome: chr12 Position: 19198921 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 70.35% | 29.65% |
| All Indica | 785 | 49.43% | 50.57% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 65 | 81.54% | 18.46% |
| Indica I | 370 | 59.19% | 40.81% |
| Indica II | 209 | 38.76% | 61.24% |
| Indica Intermediate | 206 | 42.72% | 57.28% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219198921 | C->T | INTERGENIC | None |