Detailed information of SNP:
|
SNP ID:
sf1219200372(Gbrowse)
Chromosome: chr12 Position: 19200372 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 94.92% | 5.08% |
| All Indica | 798 | 91.60% | 8.40% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 212 | 77.83% | 22.17% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219200372 | C->T | LOC_Os12g31910(LOC_Os12g31910.1) | INTRON |