Detailed information of SNP:
|
SNP ID:
sf1219217732(Gbrowse)
Chromosome: chr12 Position: 19217732 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1382 | 87.48% | 12.52% |
| All Indica | 766 | 82.38% | 17.62% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 65 | 53.85% | 46.15% |
| Indica I | 357 | 87.11% | 12.89% |
| Indica II | 205 | 76.10% | 23.90% |
| Indica Intermediate | 204 | 80.39% | 19.61% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219217732 | T->C | LOC_Os12g31930(LOC_Os12g31930.1) | Non-Synonymous SNP |