Detailed information of SNP:
|
SNP ID:
sf1219239965(Gbrowse)
Chromosome: chr12 Position: 19239965 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1399 | 60.26% | 39.74% |
| All Indica | 782 | 37.08% | 62.92% |
| All Japonica | 497 | 97.59% | 2.41% |
| Aus | 65 | 46.15% | 53.85% |
| Indica I | 367 | 36.24% | 63.76% |
| Indica II | 208 | 39.42% | 60.58% |
| Indica Intermediate | 207 | 36.23% | 63.77% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219239965 | G->A | LOC_Os12g31969(LOC_Os12g31969.1) | INTRON |