Detailed information of SNP:
|
SNP ID:
sf1219240477(Gbrowse)
Chromosome: chr12 Position: 19240477 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1393 | 59.37% | 40.63% |
| All Indica | 776 | 35.70% | 64.30% |
| All Japonica | 497 | 97.59% | 2.41% |
| Aus | 66 | 42.42% | 57.58% |
| Indica I | 364 | 34.62% | 65.38% |
| Indica II | 207 | 37.20% | 62.80% |
| Indica Intermediate | 205 | 36.10% | 63.90% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219240477 | T->C | INTERGENIC | None |