Detailed information of SNP:
|
SNP ID:
sf1219282917(Gbrowse)
Chromosome: chr12 Position: 19282917 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1382 | 98.34% | 1.66% |
| All Indica | 786 | 97.96% | 2.04% |
| All Japonica | 474 | 99.16% | 0.84% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 201 | 93.03% | 6.97% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 74 | 98.65% | 1.35% |
| Japonica Intermediate | 66 | 96.97% | 3.03% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219282917 | C->T | INTERGENIC | None |