Detailed information of SNP:
|
SNP ID:
sf1219302452(Gbrowse)
Chromosome: chr12 Position: 19302452 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1411 | 58.04% | 41.96% |
| All Indica | 792 | 93.06% | 6.94% |
| All Japonica | 497 | 3.22% | 96.78% |
| Aus | 66 | 69.70% | 30.30% |
| Indica I | 372 | 92.20% | 7.80% |
| Indica II | 211 | 96.21% | 3.79% |
| Indica Intermediate | 209 | 91.39% | 8.61% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219302452 | G->A | INTERGENIC | None |