Detailed information of SNP:
|
SNP ID:
sf1219302909(Gbrowse)
Chromosome: chr12 Position: 19302909 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 60.58% | 39.42% |
| All Indica | 798 | 94.61% | 5.39% |
| All Japonica | 497 | 3.22% | 96.78% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 93.85% | 6.15% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219302909 | A->G | INTERGENIC | None |