Detailed information of SNP:
|
SNP ID:
sf1219317270(Gbrowse)
Chromosome: chr12 Position: 19317270 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1382 | 91.17% | 8.83% |
| All Indica | 798 | 99.50% | 0.50% |
| All Japonica | 464 | 76.08% | 23.92% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 321 | 87.85% | 12.15% |
| Tropical Japonica | 82 | 28.05% | 71.95% |
| Japonica Intermediate | 61 | 78.69% | 21.31% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 82.05% | 17.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219317270 | T->C | INTERGENIC | None |