Detailed information of SNP:
|
SNP ID:
sf1219323132(Gbrowse)
Chromosome: chr12 Position: 19323132 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1391 | 95.33% | 4.67% |
| All Indica | 773 | 92.63% | 7.37% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 66 | 90.91% | 9.09% |
| Indica I | 361 | 90.86% | 9.14% |
| Indica II | 209 | 95.22% | 4.78% |
| Indica Intermediate | 203 | 93.10% | 6.90% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219323132 | C->T | LOC_Os12g32069(LOC_Os12g32069.1) | INTRON |