Detailed information of SNP:
|
SNP ID:
sf1219344662(Gbrowse)
Chromosome: chr12 Position: 19344662 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 58.35% | 41.65% |
| All Indica | 795 | 92.08% | 7.92% |
| All Japonica | 497 | 4.23% | 95.77% |
| Aus | 66 | 78.79% | 21.21% |
| Indica I | 375 | 94.40% | 5.60% |
| Indica II | 211 | 86.73% | 13.27% |
| Indica Intermediate | 209 | 93.30% | 6.70% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219344662 | T->C | LOC_Os12g32120(LOC_Os12g32120.1) | INTRON |