Detailed information of SNP:
|
SNP ID:
sf1219353816(Gbrowse)
Chromosome: chr12 Position: 19353816 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1185 | 61.01% | 38.99% |
| All Indica | 590 | 29.15% | 70.85% |
| All Japonica | 492 | 98.37% | 1.63% |
| Aus | 54 | 51.85% | 48.15% |
| Indica I | 256 | 29.30% | 70.70% |
| Indica II | 178 | 20.22% | 79.78% |
| Indica Intermediate | 156 | 39.10% | 60.90% |
| Temperate Japonica | 333 | 98.80% | 1.20% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 65 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 35 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219353816 | A->G | INTERGENIC | None |