Detailed information of SNP:
|
SNP ID:
sf1219368950(Gbrowse)
Chromosome: chr12 Position: 19368950 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 67.23% | 32.77% |
| All Indica | 799 | 46.68% | 53.32% |
| All Japonica | 497 | 97.79% | 2.21% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 375 | 41.07% | 58.93% |
| Indica II | 213 | 53.05% | 46.95% |
| Indica Intermediate | 211 | 50.24% | 49.76% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219368950 | G->A | INTERGENIC | None |